A long intake shouldn't hurt the blower - it just makes it work harder for a given airflow because of the increased drag.
If I had a JRSC and I was hell-bent on using a custom intake, I'd probably use a short-ram intake and fab some good air ducts to supply cool air to it.
If I had a JRSC and I was hell-bent on using a custom intake, I'd probably use a short-ram intake and fab some good air ducts to supply cool air to it.